1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggtgtgtgcaattttgcctagagaaaaaacagaacatgttgtgtcagaattggctaaactaacccatgagaattttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGATGATGGAGAATCCAAAATCACCAAGTGTAACACAATAAACACAAATACCA
species | Glycine max |
transcript | GLYMA04G01400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAG GTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGATEST: gi|33389906|gb|CA853113.1|CA853113
genomic: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAGgtaggtgtgt ... ttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGAT
EST: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAG GTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGATEST: gi|22522891|gb|BU081702.1|BU081702
genomic: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAGgtaggtgtgt ... ttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGAT
EST: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAG GTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGATEST: gi|10847455|gb|BF071548.1|BF071548
genomic: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAGgtaggtgtgt ... ttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGAT
EST: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAG GTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGGCGCTGAEST: gi|19348569|gb|BM893101.1|BM893101
genomic: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAGgtaggtgtgt ... ttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTC-GGCGCTGA
EST: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAG GTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGAT
genomic: GGAAAGACAGTTTCAAGAAGAGGAAAACTGACAAGCCTCACAATCCCAAGgtaggtgtgt ... ttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGAT
cagaacatgttgtgtcagaattggctaaactaacccatgagaattttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGATGATGGAGAATCCAAAATCACCAAGTGTAACACAATAAACACAAATACCA
aactaac putative branch site (score: 1)
ttttttgttt putative PPT
agaattttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgtgtgcaattttgcctagagaaaaaacagaacatgttgtgtcagaattggctaaactaacccatgagaattttttgtttagGTTGTTGCAGAAAATGAGAACAAAGACAAGAGGATCAAAGTCGGCGCTGATGATGGAGAATCCAAAATCACCAAGTGTAACACAATAAACACAAATACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA