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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacttcttcttcttcttctttttccgcattttctttttcgctttctatctattattctacaattgaatcaattaccgaatattttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCGAGGCTTTTCCCTATTACAACAAATCGCACTTGATTTCCATTCCAATGCC

Basic information

species Glycine max
transcript GLYMA03G39530.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308192|gb|FK001290.1|FK001290
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|213613616|gb|DB963304.1|DB963304
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|151403727|gb|EV273537.1|EV273537
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|192295129|gb|FG986848.1|FG986848
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|192303311|gb|FG995619.1|FG995619
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|192322679|gb|FK015016.1|FK015016
EST:     AACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: AACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|7234298|gb|AW569637.1|AW569637
EST:     GGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: GGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|298184947|gb|HO030160.1|HO030160
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         GTGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|4282509|gb|AI440540.1|AI440540
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|9903152|gb|BE612120.1|BE612120
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|21677242|gb|BQ629593.1|BQ629593
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|18040959|gb|BM309253.1|BM309253
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|24135512|gb|BU926022.1|BU926022
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|151397822|gb|EV267695.1|EV267695
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|22541742|gb|BU091585.1|BU091585
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|192313101|gb|FK004691.1|FK004691
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|192299932|gb|FG992145.1|FG992145
EST:     ATGGTTCCTCCTCAACTCTCCTTCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|298194345|gb|HO040993.1|HO040993
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|298180513|gb|HO022066.1|HO022066
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|151399910|gb|EV269781.1|EV269781
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|151399252|gb|EV269123.1|EV269123
EST:     CCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: CCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|192313102|gb|FK004692.1|FK004692
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|9203900|gb|BE330124.1|BE330124
EST:     ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAACTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttacttctt ... ttttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgctttctatctattattctacaattgaatcaattaccgaatattttctgcagATGTGAAATCGATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCGAGGCTTTTCCCTATTACAACAAATCGCACTTGATTTCCATTCCAATGCC
                                           tattttct  CT-rich tract
     tttctatctattatt  TA-rich tract