1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gaaacgttatgaatccgagacgatatctatgcacgcattttccgttcactctgatgatttttttggttttgtttgctgaaattgttatttttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG
species | Glycine max |
transcript | GLYMA02G46200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAG GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATEST: gi|213615236|gb|DB965044.1|DB965044
genomic: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAGgttcgtctct ... ttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
EST: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAG GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATEST: gi|213616511|gb|DB965709.1|DB965709
genomic: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAGgttcgtctct ... ttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
EST: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAG GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATEST: gi|120491274|gb|EH219441.1|EH219441
genomic: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAGgttcgtctct ... ttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
EST: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAG GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATEST: gi|209726695|gb|BW672449.1|BW672449
genomic: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAGgttcgtctct ... ttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
EST: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAG GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATEST: gi|298170020|gb|HO018644.1|HO018644
genomic: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAGgttcgtctct ... ttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
EST: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAG GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATEST: gi|298174924|gb|HO014841.1|HO014841
genomic: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAGgttcgtctct ... ttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
EST: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAG GTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
genomic: GTCTCCGTTCCGTCGTCAACCCTACCTTTGGATCTGCGTTTGGCCTTCAGgttcgtctct ... ttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCAT
tcactctgatgatttttttggttttgtttgctgaaattgttatttttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG
ctctgat putative branch site (score: 4)
ttatttttc putative PPT
tgaaattgttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacgttatgaatccgagacgatatctatgcacgcattttccgttcactctgatgatttttttggttttgtttgctgaaattgttatttttcaaattagGTTTTGAAGTCCGAAGGACGAAGAAGAAGAGATTCCTGACAGCGTAATCATGTTTGGTGTCGTAAGGCGAAGGGTTGCTTCTGGCAGCCCGTCTCCTTGG
- - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - - - - - cgttcac
- - - - - - - - - - - - - - - - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa