1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttcttccttaacaatactctaataggtttcttagtggcaaatgttgtttgagtgtttattttcttatactaatacctttgaattttctgtctgtgcagACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAG
species | Glycine max |
transcript | GLYMA02G43410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAAT ACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCEST: gi|15813540|gb|BI785815.1|BI785815
genomic: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggg ... gtctgtgcagACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
EST: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAAT ACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCEST: gi|192311000|gb|FK001609.1|FK001609
genomic: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggg ... gtctgtgcagACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
EST: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAAT ACTGTTCCTTCTTGTCGAAATCTCTACAAGAACTCGTTTACCTATCACTGCEST: gi|13312251|gb|BG405902.1|BG405902
genomic: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggg ... gtctgtgcagACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
EST: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAAT ACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
genomic: CGTCCCGCTCCGAGCTTCTCAAGACTCAGGGGATTTCTCGTATCCTCAATgtaagagggg ... gtctgtgcagACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGC
ttgtttgagtgtttattttcttatactaatacctttgaattttctgtctgtgcagACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAG
tactaat putative branch site (score: 1)
ttttctgtct putative PPT
tgtttattttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcttccttaacaatactctaataggtttcttagtggcaaatgttgtttgagtgtttattttcttatactaatacctttgaattttctgtctgtgcagACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCGTTTACCTATCACTGCCTTCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- ttcttcc
- - - - - -aacaatac
- - - - - - - - - - - - - - - -cttagtg
- - - - - - - - - - - - - - - - - - - - - - - - -ttgagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctttg