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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttctccgcacgcaatcaaaactctctctcactaacactagttaataaatattttattttatttttttaattttcattattcgcagGTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGTTCAACACGACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCCACCGG

Basic information

species Glycine max
transcript GLYMA02G11090.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616510|gb|DB965708.1|DB965708
EST:     CACCACTACTTCCACCACTCTCCCTCCTTCCTCTCCATCATTCCCATCCG                         GTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGT
genomic: CACCACTACTTCCACCACTCTCCCTCCTTCCTCTCCATCATTCCCATCCGgtacgcttct ... ttattcgcagGTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGT
EST: gi|10232993|gb|BE801881.1|BE801881
EST:     CACCACTACTTCCACCACTCTCCCTCCTTCCTCTCCATCATTCCCATCCG                         GTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGT
genomic: CACCACTACTTCCACCACTCTCCCTCCTTCCTCTCCATCATTCCCATCCGgtacgcttct ... ttattcgcagGTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacactagttaataaatattttattttatttttttaattttcattattcgcagGTCTGTCGTACCACATCGACTGTGGAAGTCCCACGAACTCCACCGACCAGTTCAACACGACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCCACCGG
                                 ttttaat  putative branch site (score: 3)
                                       ttttcatt  CT-rich tract
          ttaataaatattttat  TA-rich tract