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gtgcgaaaatgcagctcgatccgaagtgttcttcgccgtgattttttttttttttttgtgttttttgagttttgaattttgaatttttgttttttttgtgtgtgtttgtgtttgcagACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAG
species | Glycine max |
transcript | GLYMA02G09390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAG ACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCEST: gi|193315901|gb|FK281057.1|FK281057
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAGgtgcgaaaat ... gtgtttgcagACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGC
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAG ACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCEST: gi|193528136|gb|FK487670.1|FK487670
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAGgtgcgaaaat ... gtgtttgcagACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGC
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAG ACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCEST: gi|193380706|gb|FK347431.1|FK347431
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAGgtgcgaaaat ... gtgtttgcagACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGC
EST: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAG ACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGC
genomic: TTCGGATCCGGTGAAGGTGGAGCTCAATCGCCTCGAGAATGAAGTTCGAGgtgcgaaaat ... gtgtttgcagACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGC
ttttgagttttgaattttgaatttttgttttttttgtgtgtgtttgtgtttgcagACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAG
agttttgaattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgaaaatgcagctcgatccgaagtgttcttcgccgtgattttttttttttttttgtgttttttgagttttgaattttgaatttttgttttttttgtgtgtgtttgtgtttgcagACAAGGACAGGGAATTATCGGAAGCACAGGCTGAGATCAAAGCCTTGAGGCTCTCTGAACGGCTTAGAGAAAAAGCCGTTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA