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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccagtttttagtcaaagttctgtttatctttttatattgcctgatttttacatttcactttacaaatgtgttattttgatcttctacttactgaaacaaaatgaagaaaaaaaaatattaataatgggttagtagagccttaactgaatcacagAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCCCGTGATCTTGCACCAGAGGTT

Basic information

species Glycine max
transcript GLYMA02G03800.1
intron # 1
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03800.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G60070.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatccagtttttagtcaaagttctgtttatctttttatattgcctgatttttacatttcactttacaaatgtgttattttgatcttctacttactgaaacaaaatgaagaaaaaaaaatattaataatgggttagtagagccttaactgaatcacagAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCCCGTGATCTTGCACCAGAGGTT
                            |||| ||| ||  ||  | ||||||   ||| | |    |   ||  | |||| |  || | ||  |     |            | ||| | ||||       ||   ||| |||| ||| |     |||||||| |||||||| || ||||| || ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||| || || || |||
---------------------------gtatccttt-atggtgt-taatttttgattttgattcccta---gtagtgttttaactttttgctggcatcttcg----------cacaaatttttaagttcatcttgtgagaaccttgacttacgtctagAGATCTGAATCACACGAACCAGTACATTGTGGGGCTTGCTCTCTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTT

upper sequence: GLYMA02G03800.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 2
gtatccagtttttagtcaaagttctgtttatctttttatattgcctgatttttacatttcactttacaaatgtgttattttgatcttctacttactgaaacaaaatgaagaaaaaaaaatattaataatgggttagtagagccttaactgaatcacagAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCCCGTGATCTTGCACCAGAGGTT
                                                     | |    |    |||     |||  |  ||| ||||   |||  |  | ||| ||| ||||||||  || | |  |   ||    || |||||||| |     |||||||| ||||| |  || ||||| || ||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||| || || 
----------------------------------------------------caaaaaaaaaaaaacattatcgttggtacgatattct---tacaaagtcgaaaagaaaaaaaaaaatcatcactcct---ttgcaggaaccttaacttatatttagAGATCTCAATCATAACAACCAGTACATTGTGGGACTTGCTCTTTGTGCTCTGGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTTGCACCTGAAGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaagaaaaaaaaatattaataatgggttagtagagccttaactgaatcacagAGATCTTAATCACACAAATCAGTATATAGTGGGACTTGCTCTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCCCGTGATCTTGCACCAGAGGTT
 agccttaac  putative branch site 
       aaaaaaaaatattaat  TA-rich tract