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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattcttcttcccctcctctctcaattaatcactctcgtcgttttcgtcgtcgtcgtcgtcgtcgaagatgaacttcaatttggagcatgaatgaatgaatgaattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGA

Basic information

species Glycine max
transcript GLYMA02G01610.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01610.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G02030.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgaattcttcttcccctcctctctcaattaatcactctcgtcgttttcgtcgtcgtcgtcgtcgtcgaagatgaacttcaatttggagcatgaatgaatgaatgaattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGA
                                |     |    ||  |    || ||  | |   ||  |  |||  |  |      ||  ||      | | ||  || |||||    | ||||| |||||||| |  ||||| ||| | || |||  |||||||||||| || || ||||||||||| ||||||||||||||||| || || |
------------------------------gtttgtgttaagtgtggtgacagtagtgctagcgatctgat-tgagatatatgccacagtctggtgattttattggcttgtgcagATCAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAA

upper sequence: GLYMA02G01610.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G02030.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgaattcttcttcccctcctctctcaattaatcactctcgtcgttttcgtcgtcgtcgtcgtcgtcgaagatgaacttcaatttggagcatgaatgaatgaat-----gaattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGA
                        |   || || |   | ||  |    || ||    || ||  | |       | |   || |    ||        ||| |     |  || |||||    | ||||| |||||||| |  ||||| ||| | || |||  |||||||||||| || || ||||||||||| ||||||||||||||||| || || |
--------------------aaattgggtttatgaggtttgtgttaagtgtggtgacagtagtgctagcgatctgattgagatatatgccacagtctggtgattttattggcttgtgcagATCAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGATTAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAA

upper sequence: GLYMA02G01610.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 1
gtgaattcttcttcccctcctctctcaattaatcactctcgtcgttttcgtcgtcgtcgtcgtcgtcgaagatgaacttcaatttggagcatgaatgaatgaatgaattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGA
                        || |  | | |  || |   |  | || | | |    || ||     || | ||||   |   |  ||   ||  | | |    | || ||||||| || || ||||||||||| ||||| ||| | || |||| |||||| ||||| || || ||||| ||||| |||||||| ||| |||| || || |
-------------gaaggtaggggtccagcagtgag-cttggtatccttgttg-cttacctgtagttttctataatcttcttatataataatatttgcttcatttgtatgtgaagGCACAAAAATCAAATTTGGAAGGACTTCTTCAAAGACATGTTGAAATGGCAGCTGAGATAAAAAATCTTGACACTGACTTGCAGATGTTAGTGTATGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410275|gb|EV280090.1|EV280090
EST:     ACGACATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAACATTCTG                         GCACACAAGTCCAATTTGGAAGGCCTCCTACAACGCCACGTTGCAATGGCT
genomic: ACGACATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAACATTCTGgtgaattctt ... aattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCT
EST: gi|207843199|gb|GD816801.1|GD816801
EST:     ACGACATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAACATTCTG                         GCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCT
genomic: ACGACATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAACATTCTGgtgaattctt ... aattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCT
EST: gi|213589560|gb|DB965804.1|DB965804
EST:     ACGACATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAACATTCTG                         GCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCT
genomic: ACGACATCAATTCCACCTCCTTCGATCCCGATCAGTACATGAACATTCTGgtgaattctt ... aattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcgtcgaagatgaacttcaatttggagcatgaatgaatgaatgaattatgcagGCACACAAGTCCAATTTGGAAGGCCTTCTACAACGCCACGTTGCAATGGCTGCTGAAATCAAGAATCTCGACACCGACTTGCAAATGCTAGTTTACGAGA
                                     aatgaatgaattat  TA-rich tract