1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtttctatgtgatgaacaagttatgcaaaatagtacatctagtccttcaatatgctgattcttgttttgctgatttgcatttaattatcattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTCTGCAGTCTATCCCTTGCATCCGTTCTGGTAGTTTTGCTGACATTGGGC
species | Glycine max |
transcript | GLYMA02G01210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAA GATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTEST: gi|213606440|gb|DB963005.1|DB963005
genomic: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAgtcagttttt ... cattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
EST: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAA GATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTEST: gi|213605713|gb|DB972333.1|DB972333
genomic: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAgtcagttttt ... cattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
EST: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAA GATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTEST: gi|209718258|gb|BW677480.1|BW677480
genomic: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAgtcagttttt ... cattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
EST: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAA GATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTEST: gi|213596906|gb|DB958086.1|DB958086
genomic: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAgtcagttttt ... cattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
EST: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAA GATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTEST: gi|213616581|gb|DB967539.1|DB967539
genomic: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAgtcagttttt ... cattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
EST: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAA GATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTEST: gi|213599877|gb|DB966421.1|DB966421
genomic: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAgtcagttttt ... cattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
EST: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAA GATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
genomic: GAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAgtcagttttt ... cattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTT
ccttcaatatgctgattcttgttttgctgatttgcatttaattatcattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTCTGCAGTCTATCCCTTGCATCCGTTCTGGTAGTTTTGCTGACATTGGGC
atttgcatttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttctatgtgatgaacaagttatgcaaaatagtacatctagtccttcaatatgctgattcttgttttgctgatttgcatttaattatcattgtgtagGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTTGAATCTGCGGTTCTGCAGTCTATCCCTTGCATCCGTTCTGGTAGTTTTGCTGACATTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - ctatgtg
- - - - - - - - - - - -tatgcaa
- - - - - - - - - - - - - - - - - - - - - - tccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt