1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atttttagtgtgttttattttatttattttttgttatcctgttattatttgattggaaataatgttggatgttatctgtttggaatctttttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
species | Glycine max |
transcript | GLYMA02G00750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|22541847|gb|BU091690.1|BU091690
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|19347696|gb|BM892484.1|BM892484
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|193383760|gb|FK346867.1|FK346867
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|6566941|gb|AW234572.1|AW234572
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|193410737|gb|FK375898.1|FK375898
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTCGCCATTTCATTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|254328397|gb|GR835362.1|GR835362
genomic: CTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|4291000|gb|AI437557.1|AI437557
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAEST: gi|208218769|gb|GE017081.1|GE017081
genomic: CTTCCTCTCGCCATTTCACTCTCTCTTCCTATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
EST: TATCTCCTCATCCTATTGCAG GACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
genomic: TATCTCCTCATCCTATTGCAGgttcgtaaca ... ttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTA
tatttgattggaaataatgttggatgttatctgtttggaatctttttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
atttgat putative branch site (score: 5)
tctttttgt putative PPT
aaataatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttagtgtgttttattttatttattttttgttatcctgttattatttgattggaaataatgttggatgttatctgtttggaatctttttgtgggcagGACAATAAGGTGCTCAGCACCACTGAGCGGTTAATAGCTTTTGCTCTGCTAGTTGAGGCTTATTCATCCCAGAAACCGGCTTCAAATCCCTTCATAAGCT
- - - -gtgtgtt
- - - - - - - - - - - - - - - - - - -cctgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgt