1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtcttatatatgtctatcatcgattagctagctaaatcatatatattagtttctcatttaccttttctaaaagctgaaattaatgcatataatttgaagtttatcagaacatgcatgttaacatctttttatttcatacattggtctggcactatttcctctctctgcttactttgttctttaattctcttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTTGGTGAAATGGAGCAAGA
species | Glycine max |
transcript | GLYMA01G42360.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTEST: gi|209727737|gb|BW658476.1|BW658476
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTEST: gi|209724933|gb|BW669623.1|BW669623
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTEST: gi|213590959|gb|DB973742.1|DB973742
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTEST: gi|12689209|gb|BG155545.1|BG155545
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTEST: gi|192319988|gb|FK013008.1|FK013008
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTCGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTEST: gi|10846589|gb|BF069430.1|BF069430
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTEST: gi|209727237|gb|BW655248.1|BW655248
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
EST: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAG ACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
genomic: CCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGgtcttatata ... cttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATT
gtctggcactatttcctctctctgcttactttgttctttaattctcttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTTGGTGAAATGGAGCAAGA
tttcctctctctgctt CT-rich tract
tttaattctctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttatatatgtctatcatcgattagctagctaaatcatatatattagtttctcatttaccttttctaaaagctgaaattaatgcatataatttgaagtttatcagaacatgcatgttaacatctttttatttcatacattggtctggcactatttcctctctctgcttactttgttctttaattctcttttttcagACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTTGGTGAAATGGAGCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA