1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttgttcatgtatttatgtttaattcaaaaaccttctatgaaggtgaaacatgtatgtatttttttgtatcttatctgattttaagattgtggttttcagTCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCTGCCCTTCATGAGATTGAACTTCTTTCATCCATTGCTGACCACAATCCAA
species | Glycine max |
transcript | GLYMA01G36260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTGTGGCTCGCTTACGATACTAAAACTGAG TCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCTEST: gi|193319668|gb|FK284713.1|FK284713
genomic: CCGTGTGGCTCGCTTACGATACTAAAACTGAGgtatgtttca ... tggttttcagTCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCT
EST: GTTGGG-TCAGTTTTCCACCGTGTGGCTCGCTTACGATACTAAAACTGAG TCATATGTTGCT
genomic: GTTGGGGTCAGTTTTCCACCGTGTGGCTCGCTTACGATACTAAAACTGAGgtatgtttca ... tggttttcagTCATATGTTGCT
gaaacatgtatgtatttttttgtatcttatctgattttaagattgtggttttcagTCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCTGCCCTTCATGAGATTGAACTTCTTTCATCCATTGCTGACCACAATCCAA
atctgat putative branch site (score: 4)
ttttc putative PPT
tatttttttgtatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttcatgtatttatgtttaattcaaaaaccttctatgaaggtgaaacatgtatgtatttttttgtatcttatctgattttaagattgtggttttcagTCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAGTTTGCTCAGGCTGCCCTTCATGAGATTGAACTTCTTTCATCCATTGCTGACCACAATCCAA
- - - catgtat
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