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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttcttcacacacaatcaaaacactctctctcactaacactcttaattaatagttttttttttaaaaaaaattcacagGTCTGTCGTACCACATCGACTGCGGAAGTCCGACGAATTCCACCGACCAGTTCAACACGACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCTACTGG

Basic information

species Glycine max
transcript GLYMA01G22470.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706767|gb|BW678136.1|BW678136
EST:     CACCACCACTTCTACCCCTCTCCCTCTTCCCACTCCTTCATTCCCATCCG                         GTCTGTCGTACCACATCGACTGCGGAAGTCCGACGAATTCCACCGACCAGT
genomic: CACCACCACTTCTACCCCTCTCCCTCTTCCCACTCCTTCATTCCCATCCGgtacgcttct ... aaattcacagGTCTGTCGTACCACATCGACTGCGGAAGTCCGACGAATTCCACCGACCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctctcactaacactcttaattaatagttttttttttaaaaaaaattcacagGTCTGTCGTACCACATCGACTGCGGAAGTCCGACGAATTCCACCGACCAGTTCAACACGACGTGGCTCTCCGACCGCTACTTCAGCGGCGGCGCTACTGG
           taacactcttaattaa  TA-rich tract