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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgactgcagcggcagcgaagtaatcgtgttacttgcgatgggtgtgtggggttgaagatggacacggcgttgagcggatggatgggtgtgtggggttgaagacgcgctacatgatgacggatgacgcgttgatgaagatctatgtttgtgctctgtgttgctgggcgcaacagGAGCGTGCTATGTTGGTGGACATTCGGCCCAGGAGCATGCAGCGGGAGGAGGGCGTCATCGACACACGCGACACCGGCGCCAAGAGCCCCATCTCAGTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO96529
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49468633|gb|BP096494.1|BP096494
EST:     CGACGCAACCCACCACCGCACTGCAGGCCTACGAGGCGGCCACCACGGAC                         GAGCGTGCTATGTTGGTGGACATTCGGCCCAGGAGCATGCAGCGGGAGGAG
genomic: CGACGCAACCCACCACCGCACTGCAGGCCTACGAGGCGGCCACCACGGACgtgagtgact ... ggcgcaacagGAGCGTGCTATGTTGGTGGACATTCGGCCCAGGAGCATGCAGCGGGAGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatgacgcgttgatgaagatctatgtttgtgctctgtgttgctgggcgcaacagGAGCGTGCTATGTTGGTGGACATTCGGCCCAGGAGCATGCAGCGGGAGGAGGGCGTCATCGACACACGCGACACCGGCGCCAAGAGCCCCATCTCAGTGC
        cgttgat  putative branch site (score: 5)
                      tatgttt  TA-rich tract