1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...aactcctgtcaacaccaaccacactagaattgctctccccacacacactcgccttgctcctttccctcgttccttccctccgcgcgatcacacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCGCTACAGAACAACCTGCACGAGCTGTGGGCGCTGCTCAACTTCCTGCTGC
species | Chlamydomonas reinhardtii |
transcript | EDP05471 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTG GTGGTCCGCCAGCTCAAGACCAACTACCGGCTEST: gi|49470809|gb|BP098670.1|BP098670
genomic: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTGgtgcgtgctc ... cacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCT
EST: CAAGAACGAGAACAGCCGCCTGTCGCTG GTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCGEST: gi|10792716|gb|AV630082.1|AV630082
genomic: CAAGAACGAGAACAGCCGCCTGTCGCTGgtgcgtgctc ... cacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCG
EST: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTG GTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCGEST: gi|49470727|gb|BP098588.1|BP098588
genomic: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTGgtgcgtgctc ... cacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCG
EST: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTG GTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCGEST: gi|10789131|gb|AV626851.1|AV626851
genomic: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTGgtgcgtgctc ... cacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCG
EST: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTG GTGGTCCGCCAGCTCEST: gi|10790719|gb|AV628085.1|AV628085
genomic: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTGgtgcgtgctc ... cacctcgcagGTGGTCCGCCAGCTC
EST: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTG GTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCGEST: gi|49467092|gb|BP095005.1|BP095005
genomic: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTGgtgcgtgctc ... cacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCG
EST: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTG GTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCG
genomic: TCATCGACGAGGCGCACCGCATCAAGAACGAGAACAGCCGCCTGTCGCTGgtgcgtgctc ... cacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactcctgtcaacaccaaccacactagaattgctctccccacacacactcgccttgctcctttccctcgttccttccctccgcgcgatcacacctcgcagGTGGTCCGCCAGCTCAAGACCAACTACCGGCTGCTGATCACGGGCACGCCGCTACAGAACAACCTGCACGAGCTGTGGGCGCTGCTCAACTTCCTGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - -caacacc
- - - - - - - - aaccaca
- - - - - - - - - - - - - - - - - - ccccaca