1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ccgccccgccccattcacccatccctcctaccgcactcaccgcaccgcacccgccgcaccgccccctcgcgcttccccgcgcggccgtgtccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGACCTGAACCGCATGACCATGGCGGAGCTGTACAAGCACTACGACCTGACG
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|6544442|gb|AV390226.1|AV390226
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|14228932|gb|BG847764.1|BG847764
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|15692808|gb|BI717113.1|BI717113
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|15695185|gb|BI719490.1|BI719490
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|49461909|gb|BP089822.1|BP089822
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|23367697|gb|BU655515.1|BU655515
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAANGGCCTGGNEST: gi|16072685|gb|BI874681.1|BI874681
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGG-
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|23363461|gb|BU651281.1|BU651281
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|15695448|gb|BI719753.1|BI719753
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|10768527|gb|AV619352.1|AV619352
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|16437590|gb|BM002810.1|BM002810
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|49461921|gb|BP089834.1|BP089834
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|16431544|gb|BI996770.1|BI996770
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|22050064|gb|BQ809049.1|BQ809049
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|49464632|gb|BP092545.1|BP092545
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|23367839|gb|BU655657.1|BU655657
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGAEST: gi|49462669|gb|BP090582.1|BP090582
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
EST: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCT CTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
genomic: TCGCCGCTGATGGGCCTGTTCGAGAAGCGCCGCGCGCGCAACTTCTTCCTgtgagccggg ... ccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGA
cgcacccgccgcaccgccccctcgcgcttccccgcgcggccgtgtccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGACCTGAACCGCATGACCATGGCGGAGCTGTACAAGCACTACGACCTGACG
tgtccttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgccccgccccattcacccatccctcctaccgcactcaccgcaccgcacccgccgcaccgccccctcgcgcttccccgcgcggccgtgtccttccacagCTACGTGCAGGACTACGACGAGTCTGACCCCAAGACGCACAAGGGCCTGGACCTGAACCGCATGACCATGGCGGAGCTGTACAAGCACTACGACCTGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - tcaccca
- - - - - - - - - - - - - - - - -cactcac
- - - - - - - - - - - - - - - - - - - - - - - gcacccg