1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcaggcgcgtcgcgctgtcacctggcttgtgcgttgtggcgacgccttcccccgcgcccctcgcgcctcctcacacctgttccccgccttccctcttcagGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGGCGTCATGGCCGGCCTGCAGGGCAAGGTGCAGAACTTCTCCATGGACGAG
species | Chlamydomonas reinhardtii |
transcript | EDP05574 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATACAACGTGGTCAACCCCTTCGAGTTCATGGAGATGATCTCGCTGCA GGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGGEST: gi|15694460|gb|BI718765.1|BI718765
genomic: CAATACAACGTGGTCAACCCCTTCGAGTTCATGGAGATGATCTCGCTGCAgtgagttttg ... ccctcttcagGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGG
EST: CAATACAACGTGGTCAACCCCTTCGAGTTCATGGAGATGATCTCGCTGCA GGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGGEST: gi|161804563|gb|FC088865.1|FC088865
genomic: CAATACAACGTGGTCAACCCCTTCGAGTTCATGGAGATGATCTCGCTGCAgtgagttttg ... ccctcttcagGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGG
EST: CAATACAACGTGGTCAACCCCTTCGAGTTCATGGAGATGATCTCGCTGCA GGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGG
genomic: CAATACAACGTGGTCAACCCCTTCGAGTTCATGGAGATGATCTCGCTGCAgtgagttttg ... ccctcttcagGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGG
cttcccccgcgcccctcgcgcctcctcacacctgttccccgccttccctcttcagGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGGCGTCATGGCCGGCCTGCAGGGCAAGGTGCAGAACTTCTCCATGGACGAG
tcctcac putative branch site (score: 2)
cgcctcctcacacctg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggcgcgtcgcgctgtcacctggcttgtgcgttgtggcgacgccttcccccgcgcccctcgcgcctcctcacacctgttccccgccttccctcttcagGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGACTACCAGAAGAACGGCGTCATGGCCGGCCTGCAGGGCAAGGTGCAGAACTTCTCCATGGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - -tgtgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacctg