1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtggcaactggcaggcacgtgagggatatcacacatgaacaggtggaggcacctcatgactgtacccacctgcgtcgccatcaactagcactagctgatcatgcaacacgtcccatcgttgccctgccacatgctacaatgccctgcgcagTATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCGCAACACGCTCAAGCTGGCGGACTTCGGGCTGGCGCGCGCGTTCGGGATT
species | Chlamydomonas reinhardtii |
transcript | EDP08130 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTACATGTGGCAAATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG TATCCTGCACCGCGACCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCGEST: gi|16434131|gb|BI999357.1|BI999357
genomic: ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCGgtgagtggca ... ccctgcgcagTATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCG
EST: ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG TATCCTGCACCGCGATCTGAAGEST: gi|15701513|gb|BI725818.1|BI725818
genomic: ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCGgtgagtggca ... ccctgcgcagTATCCTGCACCGCGATCTGAAG
EST: ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG TATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCGEST: gi|15694668|gb|BI718973.1|BI718973
genomic: ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCGgtgagtggca ... ccctgcgcagTATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCG
EST: ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCG TATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCG
genomic: ATGTACATGTGGCAGATGCTGAGCGGTATCGCCTTCTGCCACTCGCGGCGgtgagtggca ... ccctgcgcagTATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCG
gatcatgcaacacgtcccatcgttgccctgccacatgctacaatgccctgcgcagTATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCGCAACACGCTCAAGCTGGCGGACTTCGGGCTGGCGCGCGCGTTCGGGATT
agctgat putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggcaactggcaggcacgtgagggatatcacacatgaacaggtggaggcacctcatgactgtacccacctgcgtcgccatcaactagcactagctgatcatgcaacacgtcccatcgttgccctgccacatgctacaatgccctgcgcagTATCCTGCACCGCGATCTGAAGCCGCAGAACCTGCTCATCGACCGCTCGCGCAACACGCTCAAGCTGGCGGACTTCGGGCTGGCGCGCGCGTTCGGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG