1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccgaagccgtgtcctacgcgcacagcgctgtccagccttctctatgcgcttccctcgaccctcctcttaccccgacttcccctttatgccccacacacagCATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGAGGCGGTGGAGATTGAGCAGGAGTTCTGCACGGAGGCGCTGCCGGTGGAC
species | Chlamydomonas reinhardtii |
transcript | EDP05574 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTCAG CATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGAEST: gi|161804563|gb|FC088865.1|FC088865
genomic: ATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTCAGgtgaggagcg ... ccacacacagCATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGA
EST: ATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTCAG CATGCTCAACACGCGCATTGACGAGACGCGCGTCAAGCAGATCATCGTGGAEST: gi|15697020|gb|BI721325.1|BI721325
genomic: ATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTCAGgtgaggagcg ... ccacacacagCATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGA
EST: ATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTCAG CATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGA
genomic: ATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCATGCTGTTCAGgtgaggagcg ... ccacacacagCATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGA
gcgcttccctcgaccctcctcttaccccgacttcccctttatgccccacacacagCATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGAGGCGGTGGAGATTGAGCAGGAGTTCTGCACGGAGGCGCTGCCGGTGGAC
ctcttac putative branch site (score: 3)
ccctcctcttaccccg CT-rich tract
tttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgaagccgtgtcctacgcgcacagcgctgtccagccttctctatgcgcttccctcgaccctcctcttaccccgacttcccctttatgccccacacacagCATGCTCAACACGCGCATTGATGAGACGCGCGTCAAGCAGATCATCGTGGAGGCGGTGGAGATTGAGCAGGAGTTCTGCACGGAGGCGCTGCCGGTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - -gcgcaca