1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgcgtttaggggcggcgggtgggtcggctcacccgcatacacatgcacacgcactctctcacagcctgtggtgttccaacacacaactgcatctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATTCAAGGAGTTGAGAGGAGGGAGGCATCTCCTGTGTCGGAGGCGCCGC
species | Chlamydomonas reinhardtii |
transcript | EDO97746 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGEST: gi|22066441|gb|BQ816941.1|BQ816941
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGEST: gi|10778504|gb|AV635184.1|AV635184
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGEST: gi|15372069|gb|BI531495.1|BI531495
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
cacacgcactctctcacagcctgtggtgttccaacacacaactgcatctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATTCAAGGAGTTGAGAGGAGGGAGGCATCTCCTGTGTCGGAGGCGCCGC
ctctcac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcgtttaggggcggcgggtgggtcggctcacccgcatacacatgcacacgcactctctcacagcctgtggtgttccaacacacaactgcatctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATTCAAGGAGTTGAGAGGAGGGAGGCATCTCCTGTGTCGGAGGCGCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - -ctcaccc
- - - - - - - - - - - - - - - - - - atacaca
- - - - - - - - - - - - - - - - - - - - - - gcacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca