1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttgagtgatagctccagcttggcctacaagaatggaaacagtgcctgctgccacccgtgtctgacgctctctccgctcttcgtccacctttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCGGGCTAGAAGCGTCGCAATTGCGGACGTCACGCAAGATGGAGCCCGAGG
species | Chlamydomonas reinhardtii |
transcript | EDP06355 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|161794267|gb|FC081649.1|FC081649
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|9028321|gb|BE238361.1|BE238361
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|14240466|gb|BG859282.1|BG859282
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|14242094|gb|BG860910.1|BG860910
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|14242021|gb|BG860837.1|BG860837
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|161807964|gb|FC097569.1|FC097569
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|22066689|gb|BQ817082.1|BQ817082
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAEST: gi|161818114|gb|FC102275.1|FC102275
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGA
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|23366593|gb|BU654412.1|BU654412
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|15372828|gb|BI532254.1|BI532254
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|161802719|gb|FC089137.1|FC089137
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|22070741|gb|BQ820079.1|BQ820079
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|161811408|gb|FC097990.1|FC097990
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|23366648|gb|BU654467.1|BU654467
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|15702963|gb|BI727268.1|BI727268
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATEST: gi|16072799|gb|BI874795.1|BI874795
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCAT
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|8287317|gb|BE024876.1|BE024876
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAEST: gi|161803940|gb|FC093855.1|FC093855
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAA
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|161810920|gb|FC099673.1|FC099673
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|161817918|gb|FC103613.1|FC103613
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|161796564|gb|FC082894.1|FC082894
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|15372350|gb|BI531776.1|BI531776
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCEST: gi|161823303|gb|FC110110.1|FC110110
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACTEST: gi|161812385|gb|FC095055.1|FC095055
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
EST: ATGAGTTCACAAACACCATACGCACGGAGCAGTGGCGTGAGCAGCTCAAG GGCGAGAACACGCATGCAAAGAAGGCGCTAGACATGTTTGCGGAGGCTACT
genomic: ATGAGTTCACCAACACCATTCGCACGGAGCAGTGGCGTGAGCAGCTCAAGgtgagagccg ... ttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACC
ctgctgccacccgtgtctgacgctctctccgctcttcgtccacctttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCGGGCTAGAAGCGTCGCAATTGCGGACGTCACGCAAGATGGAGCCCGAGG
gtctgac putative branch site (score: 3)
ctctctccgctcttcg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgagtgatagctccagcttggcctacaagaatggaaacagtgcctgctgccacccgtgtctgacgctctctccgctcttcgtccacctttcccaccagGGCGAGAACACGCATGCAAAGAAGGCACTAGACATGTTTGCGGAGGCTACCGGGCTAGAAGCGTCGCAATTGCGGACGTCACGCAAGATGGAGCCCGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
tttgagt
- - - - - - - - - - - - - acaagaa
- - - - - - - - - - - - - - - - - - aaacagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtctg