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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggacgcgccggcagtgggctagcaactaacagagattgtggggtggggatggattgactgcggtactgtggaggccacaggcattcggcacaatcaacatggcaccctagctaatgcattcatgcgccctgtgcctactcgtgcatgctgtgctttaacctgtacctgcctaccctgtctctgcacacacgtacagATCACGTACGCGGTGCTGGACGAGGCGGACCGCATGCTGGACCTGGGCTTTGAGCCGCACATCCGCGCCATCATGAACCTAACCCGCGCCGACCGCCAGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP03531
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6550197|gb|AV395981.1|AV395981
EST:     CAGGCCGCATGGAGGACCTACTCAACGACGGAGCGCTCAAGCTGAACCAG                         ATCACGTACGCGGTGCTGGACGAGGCGGACCGCATGCTGGACCTGGGCTTT
genomic: CAGGCCGCATGGAGGACCTACTCAACGACGGAGCGCTCAAGCTGAACCAGgtgggacgcg ... acacgtacagATCACGTACGCGGTGCTGGACGAGGCGGACCGCATGCTGGACCTGGGCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatgctgtgctttaacctgtacctgcctaccctgtctctgcacacacgtacagATCACGTACGCGGTGCTGGACGAGGCGGACCGCATGCTGGACCTGGGCTTTGAGCCGCACATCCGCGCCATCATGAACCTAACCCGCGCCGACCGCCAGA
           ctttaac  putative branch site (score: 3)
            tttaa  TA-rich tract