1 5' 3' | 2 5' 3' |
...caacttatgcacacacatacgcgcacacaccttcccacccacgcgaccccaaccccatcccacccaccgcaccacccaacctgccgcctgtctcccgcagCACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGAGCTGCTCATGGCCGCAAACTTCCTGGACACGTAGGGGGGACACATAGAT
species | Chlamydomonas reinhardtii |
transcript | EDO98353 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGAGAAGGTCTGCCAGTACTTTTACTACAAACTGCGCTACCAGAACTC CACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGAEST: gi|7427422|gb|AW661588.1|AW661588
genomic: CTGGAGAAGGTCTGCCAGTACTTTTACTACAAACTGCGCTACCAGAACTCgtgagtgatg ... tctcccgcagCACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGA
EST: CTGGAGAAGGTCTGCCAGTACTTTTACTACAAACTGCGCTACCAGAACTC CACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGAEST: gi|8933125|gb|BE227886.1|BE227886
genomic: CTGGAGAAGGTCTGCCAGTACTTTTACTACAAACTGCGCTACCAGAACTCgtgagtgatg ... tctcccgcagCACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGA
EST: CTGGAGAAGGTCTGCCAGTACTTTTACTACAAACTGCGCTACCAGAACTC CACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGA
genomic: CTGGAGAAGGTCTGCCAGTACTTTTACTACAAACTGCGCTACCAGAACTCgtgagtgatg ... tctcccgcagCACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGA
accccaaccccatcccacccaccgcaccacccaacctgccgcctgtctcccgcagCACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGAGCTGCTCATGGCCGCAAACTTCCTGGACACGTAGGGGGGACACATAGAT
cctgtctccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacttatgcacacacatacgcgcacacaccttcccacccacgcgaccccaaccccatcccacccaccgcaccacccaacctgccgcctgtctcccgcagCACCACCAAGAACATCCCTGAGTTCAAGGTGGCGCCGGAGATCGCCCTGGAGCTGCTCATGGCCGCAAACTTCCTGGACACGTAGGGGGGACACATAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - gcacaca
- - - - - acacaca
- - - - - - - - - - - - - - - - - -cacccac
- - - - - - - - - - - - - - - - - - - - - - -accccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccaac