1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cggagcatcacagcaaccccgccgccccgtacacacacacgcacaggcatacactgtcctacgcgtaatcttttccttgtgctctttaacacacgcacagGGAGGTGGCACGGCGCCACGGGCTGCCGGTGCAGGAGTTCTCTGTGCGCAACGACATGCCGTGCGGCTCAACCATTG
species | Chlamydomonas reinhardtii |
transcript | EDP05857 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACAACAACCAGCGCTACGCCACCAACGCCGTCAGCGCCGCGCTGTTCAG GGAGGTGGCACGGCGCCACGGGCTGCCGGTEST: gi|15701804|gb|BI726109.1|BI726109
genomic: AACAACAACCAGCGCTACGCCACCAACGCCGTCAGCGCCGCGCTGTTCAGgtgggggtgg ... acacgcacagGGAGGTGGCACGGCGCCACGGGCTGCCGGT
EST: AACAACAACCAGCGCTACGCCACCAACGCCGTCAGCGCCGCGCTGTTCAG GGAGGTGGCACGGCGCCACGGGCTGCCGGTGCAGGAGTTCTCTGTGCGCAAEST: gi|15696696|gb|BI721001.1|BI721001
genomic: AACAACAACCAGCGCTACGCCACCAACGCCGTCAGCGCCGCGCTGTTCAGgtgggggtgg ... acacgcacagGGAGGTGGCACGGCGCCACGGGCTGCCGGTGCAGGAGTTCTCTGTGCGCAA
EST: AACATCAACCAGCGCTACGCCACCAACGCCGTCAGCGCCGCGCTGTTCAC GGAGGTGGCACGGTGCCACAGGCTGCCGGCGCAGGAGTTCTCTGTGCGCAA
genomic: AACAACAACCAGCGCTACGCCACCAACGCCGTCAGCGCCGCGCTGTTCAGgtgggggtgg ... acacgcacagGGAGGTGGCACGGCGCCACGGGCTGCCGGTGCAGGAGTTCTCTGTGCGCAA
ggcatacactgtcctacgcgtaatcttttccttgtgctctttaacacacgcacagGGAGGTGGCACGGCGCCACGGGCTGCCGGTGCAGGAGTTCTCTGTGCGCAACGACATGCCGTGCGGCTCAACCATTG
ctttaac putative branch site (score: 3)
taatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggagcatcacagcaaccccgccgccccgtacacacacacgcacaggcatacactgtcctacgcgtaatcttttccttgtgctctttaacacacgcacagGGAGGTGGCACGGCGCCACGGGCTGCCGGTGCAGGAGTTCTCTGTGCGCAACGACATGCCGTGCGGCTCAACCATTG
- - - - -acagcaa
- - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - -cgcacag
- - - - - - - - - - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcgta