1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atcccacacacgcgcgccttttcacccaagaatgcctaccgtctaccgttttcttagctactattgaaaatttgaaatgtaaccccgcccacccacgcagGGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATGGCGCACGCGCTGCACCCCAACTACTCGGACAAGCACGACCCCGACCACC
species | Chlamydomonas reinhardtii |
transcript | EDP05857 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGCGCGACACCATCACCCGCGTGGCGCGGGCGCTGGCGGGCGGCGAGGAG GGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATGEST: gi|15701804|gb|BI726109.1|BI726109
genomic: TGCGCGACACCATCACCCGCGTGGCGCGGGCGCTGGCGGGCGGCGAGGAGgtgagaagca ... acccacgcagGGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATG
EST: CACCCGCGTGGCGCGGGCGCTGGCGGGCGGCGAGGAG GGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATGEST: gi|15696696|gb|BI721001.1|BI721001
genomic: CACCCGCGTGGCGCGGGCGCTGGCGGGCGGCGAGGAGgtgagaagca ... acccacgcagGGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATG
EST: TGCGCGACACCATCACCCGCGTGGCGCGGGCGCTGGCGGGCGGCGAGGAG GGCGCTGNGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATG
genomic: TGCGCGACACCATCACCCGCGTGGCGCGGGCGCTGGCGGGCGGCGAGGAGgtgagaagca ... acccacgcagGGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATG
ccgttttcttagctactattgaaaatttgaaatgtaaccccgcccacccacgcagGGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATGGCGCACGCGCTGCACCCCAACTACTCGGACAAGCACGACCCCGACCACC
atgtaac putative branch site (score: 3)
cccaccc putative PPT
tattgaaaatttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcccacacacgcgcgccttttcacccaagaatgcctaccgtctaccgttttcttagctactattgaaaatttgaaatgtaaccccgcccacccacgcagGGCGCTGTGGAGCGCACGCTGCGCAACTCGTTCCTGGTGTCAGCGGACATGGCGCACGCGCTGCACCCCAACTACTCGGACAAGCACGACCCCGACCACC
- - -acacacg
- - - - - - - - - - -tcaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgtaa