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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcagccaacacggatgctgggccactgcatggacgcacactgtcacgcttgcagccataatccatctgaacacccttgtcgtgcctgcggaccggcgtgtgacgtgcgtgttatgcgcggcccctgcagGTGAGAAGCGCATGGCCCAGGAGGGCTACGACGCGGACGGCAAGTCCATTGCGGCGGCGGCTATGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06571
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49462662|gb|BP090575.1|BP090575
EST:     CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGG                         GTGAGAAGCGCATGGCCCAGGAGGGCTATGACGCGGACGGCAAGTCCACTG
genomic: CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGGgtgagtgcag ... gcccctgcagGTGAGAAGCGCATGGCCCAGGAGGGCTACGACGCGGACGGCAAGTCCATTG
EST: gi|10774753|gb|AV625576.1|AV625576
EST:     CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCA-GG                         GTGAGAAGCGCATGGCCCAG-AGGGCTATGACGCGGACGGCAAGTCCACTG
genomic: CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGGgtgagtgcag ... gcccctgcagGTGAGAAGCGCATGGCCCAGGAGGGCTACGACGCGGACGGCAAGTCCATTG
EST: gi|10779000|gb|AV635680.1|AV635680
EST:     CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGG                         GTGAGAAGCGCATGGCCCAGGAGGGCTATGACGCGGACGGCAAGTCCACTG
genomic: CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGGgtgagtgcag ... gcccctgcagGTGAGAAGCGCATGGCCCAGGAGGGCTACGACGCGGACGGCAAGTCCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtcgtgcctgcggaccggcgtgtgacgtgcgtgttatgcgcggcccctgcagGTGAGAAGCGCATGGCCCAGGAGGGCTACGACGCGGACGGCAAGTCCATTGCGGCGGCGGCTATGG
                                              cccctgc  CT-rich tract