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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcctcagcaactcgtttgtttttcgaaatggagctcgctgctagcgccacgtcgctaaccccgcgaattccctcttactattctgcctgcagCTGAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTGTCGGACGGCGAGCGCCACTTCATTTCGCATGTTCTGGCCTTCTTCGCCGCTAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP05574
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466716|gb|BP094629.1|BP094629
EST:     CCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTG                         CTGAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTGTCGG
genomic: CCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTGgtgagtcctc ... ctgcctgcagCTGAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTGTCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctagcgccacgtcgctaaccccgcgaattccctcttactattctgcctgcagCTGAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTGTCGGACGGCGAGCGCCACTTCATTTCGCATGTTCTGGCCTTCTTCGCCGCTAG
                              ttccctcttactattc  CT-rich tract
                                     ttactatt  TA-rich tract