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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgccggtttcgcaggcgcgacacttgagcaaaccccagacgaagctctcgcgccctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT

Basic information

species Chlamydomonas reinhardtii
transcript EDP03036
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os05g38550.2 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------------------gtgcgccggtttcgcaggcg--cgacacttgagcaaaccccagacgaagctctcgcgccctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                                                            ||  || | ||||  ||||  ||   |||||      |   | |     | | |||   |    ||||| ||| | | ||||||||||||||| |||||||| || || || || ||||||||||||||||||||||||||||||||||| || || || || || ||
gtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttga-----tcttggcccgcctttttgcgggatcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCT

upper sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 3'ss of exon 1
-----------------------------------------------gtgcgccggtttcgcag-gcgcgacacttgagcaaaccccagacgaagctctcgc----gccctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                                                ||||||  |||         ||    |||| | |   |  |     | |   |     |   |    ||||| ||| | | | ||||||||||||| |||||||||||  ||||||| || |||||||| ||||||||||||||||| ||||| || || || || || ||
gtgcggatccatgcggctcgcttcgtcctcgttcgtcggtgttctgtttgcgccccttttttttcatccgtggattgatcgatttcggggttgggtttgtggtttggtgattggtgcagATCTCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCT

upper sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 1
------------------------------------------gtgcgccggtttcgcaggcgcgacacttgagcaaaccccagacgaagctctcgcgccctgcc---cgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                                           |    |  ||| || |          ||| |  ||    |       | | |     ||     |||||| ||| ||| | |||| |||||||| ||||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || || || || || ||
gtgcggcccgccggagttcccgtgcatctgtttccgctcgatttttttcctttttgcggattatttggctga-ctgactttgggttggtttgtggtatggtgattgacgcagATCTCGCCAAGCACCCGGTGGATGGGTTCTCGGCTGGGCTGGTCGACGATAGTAACGTATTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCT

upper sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G007276_T03 (Zea mays), 3'ss of exon 1
---------------------------------gtgcgccggtttcgc----aggcgcgacacttgagcaaaccccagacgaagctctcgcgccc-tgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                                    | ||  ||||||    |   ||  |  | |         |   |||   |     |    |   |||||| ||  | | ||||||||||||||| ||||| || || || || || ||||||||||| ||||||||||||||||||||||| || || || || || ||
gtacggatccgaacggcctcttgctcctgctctcccctcccttttcgcctcgatttgccgcgatcggctgttgatctctcgagctttctttgttggttgtcgcagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCAGGGCTTGTAGACGATAGCAACGTCTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGACACCCT

upper sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G085600_T03 (Zea mays), 3'ss of exon 1
------------------------------------------gtgcgccggtttcgcaggcgcgacacttgagcaaacc--ccagacgaagctctcgcgccctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                                           |   ||    | || |          |||   | |      |     | | | | |    ||  ||||| ||| | | | |||| |||||||| ||||| ||||| || ||||| || ||||| || ||||||||||||||||||||||| || || || || || ||
gtgcggcccgccggagttcccttgcatctgtttccgctcgattttttccctccttgcggattgtttggctgattgacctggttggtttgcggtatggtggttggc--gcagATCTCGCGAAGCACCCGGTGGATGGGTTCTCTGCTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT

upper sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G012052_T01 (Zea mays), 3'ss of exon 1
--------------------------------------gtgcgccggtttcgcaggcgcgacacttgagcaaaccccagacgaagctctcgcgccctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                                        ||  || |||  |  |  || | | |||    | | |  |||    |||      ||   | |||| ||  | | ||||||||||||||| ||||| || || || || || || |||||| | ||||||||||||||||||||||| || || || || || ||
gtacggatccgaacggtcttctgctctcccctcctttttcgcctcgatttgccgcgatcggctcctgat---atctcgaacg---ttctttgttgcttgtcacagATCTTGCGAAGAACCCCGTGGATGGGTTCTCCGCCGGGCTTGTAGACGACAGCAACATCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT

upper sequence: EDP03036 (Chlamydomonas reinhardtii), 3'ss of exon 1
lower sequence: GRMZM2G434519_T01 (Zea mays), 3'ss of exon 1
------------------------gtgcgccggtttcgcag-gcgcgacacttgagcaaaccccagacgaagctc--tcgcgccctgcc------cgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                          | |   | || | |   |  |    |||           |||   | ||  | |||   ||        |||||| ||| | | | |||| |||||||| |||||  |||| || ||||| || ||||| || ||||||||||||||||||||||| || || || || || ||
tgactggccattgaatggaaatctaagtgtgagattagtaatacttgcggattgtttggctgattgacctggttcgtttgcggtatggtggttggcgcagATCTCTCGAAGCACCCGGTGGATGGGTTCTCTACTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22072232|gb|BQ821570.1|BQ821570
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10786718|gb|AV643390.1|AV643390
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|9458744|gb|BE452391.1|BE452391
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10780562|gb|AV637242.1|AV637242
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10790337|gb|AV627703.1|AV627703
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|15370119|gb|BI529545.1|BI529545
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|15369580|gb|BI529006.1|BI529006
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22076740|gb|BQ825516.1|BQ825516
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|23365625|gb|BU653445.1|BU653445
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|14239428|gb|BG858244.1|BG858244
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|49463699|gb|BP091612.1|BP091612
EST:     TCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|6545148|gb|AV390932.1|AV390932
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22054891|gb|BQ811579.1|BQ811579
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10776972|gb|AV633652.1|AV633652
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|8576455|gb|BE128996.1|BE128996
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22076252|gb|BQ825028.1|BQ825028
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|49469196|gb|BP097057.1|BP097057
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|49462955|gb|BP090868.1|BP090868
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10770484|gb|AV621309.1|AV621309
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22049970|gb|BQ809002.1|BQ809002
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|22068226|gb|BQ818165.1|BQ818165
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10772869|gb|AV623692.1|AV623692
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10126146|gb|BE724850.1|BE724850
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
EST: gi|10784030|gb|AV640702.1|AV640702
EST:     TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGG                         AGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA
genomic: TGCGATGACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGgtgcgccggt ... ctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcaggcgcgacacttgagcaaaccccagacgaagctctcgcgccctgcccgcagAGCTCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACT
                                           ccctgccc  CT-rich tract