1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagatctttactttactctctctcacggcacacaataatgtgattctgaactaaatcttgtgatgatgctgtgtttcagTTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGACTTACTGTAGTCATCAT
species | Arabidopsis thaliana |
transcript | AT5G05780.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAG TTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATAEST: gi|86079670|gb|DR375427.1|DR375427
genomic: TTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGgttagatctt ... tgtgtttcagTTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATA
EST: CATCCCTCATCCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAG TTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATAEST: gi|164103065|gb|EL985801.1|EL985801
genomic: CATCCCTCATTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGgttagatctt ... tgtgtttcagTTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATA
EST: CATCCCTCATCCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAG TTACTGAACAAGGAACATGAAAAAGCAGAEST: gi|164177158|gb|ES023472.1|ES023472
genomic: CATCCCTCATTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGgttagatctt ... tgtgtttcagTTACTGAACAAGGAACATGAAAAAGCAGA
EST: CATCCCTCATCCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAG TTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTG
genomic: CATCCCTCATTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGgttagatctt ... tgtgtttcagTTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTG
acggcacacaataatgtgattctgaactaaatcttgtgatgatgctgtgtttcagTTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGACTTACTGTAGTCATCAT
aactaaa putative branch site (score: 2)
acaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatctttactttactctctctcacggcacacaataatgtgattctgaactaaatcttgtgatgatgctgtgtttcagTTACTGAACAAGGAACATGAAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGCCACCAGCTAGATCAGGTTTTCTCGTGACTTACTGTAGTCATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA