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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtggaaaattttatcttacgctactcttttatttatttaattattttgaggtttcttatggtttggttatgaaagtgtgatagtagcctagctaccatattgttaatgaacactaatccataccttcttatttcacagATCACGATCCAGGAATATAGTTGAAAACATATGCTCTGAATTCAACATCAAGATTGAG

Basic information

species Arabidopsis thaliana
transcript AT4G30870.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164085887|gb|ES173055.1|ES173055
EST:     TATAATGTGATCTTGATACTGGATGATCGAGAAAAGTTTGCCACCAAAGG                         ATCACGATCCAGGAATATAGTTGAAAACATATG
genomic: TATGATGTGATCTTGATACTGGATGATCGAGAAAAGTTTGCCACCAAAGGgtttgtggaa ... tatttcacagATCACGATCCAGGAATATAGTTGAAAACATATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcctagctaccatattgttaatgaacactaatccataccttcttatttcacagATCACGATCCAGGAATATAGTTGAAAACATATGCTCTGAATTCAACATCAAGATTGAG
                           cactaat  putative branch site (score: 2)
                                     taccttcttatttc  putative PPT
             atattgttaatgaa  TA-rich tract