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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtctgaattttttctttgttatgtatcctgcactttgtccccaaagctattctcacacatctatttctttacaaagATATTCTGGCACGGTTATTGGTGTGAAAGACTGCTCCCCTCACTGGAAAGACTCAAAATGGCGATGCTTAGAA

Basic information

species Arabidopsis thaliana
transcript AT4G23980.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124868453|gb|EH952890.1|EH952890
EST:     GGGATGAGATTTAAGATGCGTTTTGAGGGAGAGGATTCCCCTGAAAGAAG                         ATATTCTGGCACGGTTATTGGTGTGAAAGACTGCTCC
genomic: GGGATGAGATTTAAGATGCGTTTTGAGGGAGAGGATTCCCCTGAAAGAAGgtagtctgaa ... ctttacaaagATATTCTGGCACGGTTATTGGTGTGAAAGACTGCTCC
EST: gi|116424846|gb|EG467438.1|EG467438
EST:     GGGATGAGATTTAAGATGCGTTTTGAGGGAGAGGATTCCCCTGAAAGAAG                         ATATTCTGGCACGGTTATTGGTGTGAAAGACTGCTCCCCTCACTGGAAAGA
genomic: GGGATGAGATTTAAGATGCGTTTTGAGGGAGAGGATTCCCCTGAAAGAAGgtagtctgaa ... ctttacaaagATATTCTGGCACGGTTATTGGTGTGAAAGACTGCTCCCCTCACTGGAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatcctgcactttgtccccaaagctattctcacacatctatttctttacaaagATATTCTGGCACGGTTATTGGTGTGAAAGACTGCTCCCCTCACTGGAAAGACTCAAAATGGCGATGCTTAGAA
                            ttctcac  putative branch site (score: 2)
 tctatttcttt  putative PPT
 tatttctttacaaa  TA-rich tract