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gtaagttatccttgagtctcataaatcacttttaactaagctagtaataaataacctgcccttttggatccagACTTTGAATACAGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGAGGAGTGGCTTAAAGAGCCTGGTTCCAACGAGGCGAAGAAGTACTTGCATA
species | Arabidopsis thaliana |
transcript | AT4G16440.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCCACTCACTGGAAGCTACTTATATTGAATGATACT ACTTTGAATACAAGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGAEST: gi|19798761|gb|AU230051.1|AU230051
genomic: ATCCACTCACTGGAAGCTACTTATA-TGAATGATACTgtaagttatc ... ttggatccagACTTTGAATAC-AGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGA
EST: CCCAGAAAGAACTGATCCACTCACT-GAAGCTACTTATATGAATGATACT ACTTT-AATACAGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGAG
genomic: CCCAGAAAGAACTGATCCACTCACTGGAAGCTACTTATATGAATGATACTgtaagttatc ... ttggatccagACTTTGAATACAGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGAG
tcataaatcacttttaactaagctagtaataaataacctgcccttttggatccagACTTTGAATACAGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGAGGAGTGGCTTAAAGAGCCTGGTTCCAACGAGGCGAAGAAGTACTTGCATA
aaataac putative branch site (score: 2)
cctgccctttt CT-rich tract
tagtaataaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttatccttgagtctcataaatcacttttaactaagctagtaataaataacctgcccttttggatccagACTTTGAATACAGATCCATACCAGAATCCAACGGCGAAGAGATTATTCGAGGAGTGGCTTAAAGAGCCTGGTTCCAACGAGGCGAAGAAGTACTTGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT