1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtttgtgaacagtcaaaacttatccatctagttatttctcgtggttttgcaacatgggaaaatgattggaactgagtgagatgtgtatgtccaatttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAG
species | Arabidopsis thaliana |
transcript | AT3G54660.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCMAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCTCAAACAGCTGEST: gi|124793063|gb|EH882742.1|EH882742
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTG
EST: GGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGEST: gi|116472768|gb|EG515360.1|EG515360
genomic: GGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAG
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACCCCTCTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGEST: gi|86061670|gb|DR357427.1|DR357427
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTG
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATKCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGSTGCTGGGGTGTAGAGAAGGTTGEST: gi|86061672|gb|DR357429.1|DR357429
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTG
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGEST: gi|124963430|gb|EL037767.1|EL037767
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTG
EST: TGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAAG GGAAAGGCAAGTCCTGAAGCTAAAACAGCTEST: gi|164032530|gb|ES070431.1|ES070431
genomic: TGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGA-Ggtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCT
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCEST: gi|86061674|gb|DR357431.1|DR357431
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCC
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGEST: gi|125192261|gb|EL207215.1|EL207215
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTG
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCEST: gi|86061671|gb|DR357428.1|DR357428
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGC
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGEST: gi|124857790|gb|EH942227.1|EH942227
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTG
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTEST: gi|86078733|gb|DR374490.1|DR374490
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGT
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGEST: gi|86086942|gb|DR382701.1|DR382701
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTG
EST: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTYTGAG GGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTARAGAAGGTTG
genomic: TTGTCACTATGAGGGCTCCAACCAGGAAATTCCGCAAAGACTCCTCTGAGgtttgtttgt ... ttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTG
aacatgggaaaatgattggaactgagtgagatgtgtatgtccaatttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAG
tttcatttc CT-rich tract
aatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttgtgaacagtcaaaacttatccatctagttatttctcgtggttttgcaacatgggaaaatgattggaactgagtgagatgtgtatgtccaatttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGAGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG