1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaactgtcctctttattccagtcacttggtgaaagacacttatgcttcagtcgtactgaaaaaccagaagattaatgtgattatttttttgcttatgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGATCAATGAGAAGTACTCTTTGTTTTTGTACGTTGCTGTTTTTAATCATGGC
species | Arabidopsis thaliana |
transcript | AT3G27740.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTYTGATAACG CATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGATEST: gi|125023575|gb|EL095844.1|EL095844
genomic: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGgtaactgtcc ... atgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGAT
EST: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACG CATTTAGAGAGTTCATAGAGCTTATGAAGAGAEST: gi|124995488|gb|EL067757.1|EL067757
genomic: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGgtaactgtcc ... atgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGA
EST: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACG CATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCEST: gi|86059789|gb|DR355546.1|DR355546
genomic: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGgtaactgtcc ... atgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTC
EST: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACG CATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGATEST: gi|47830985|gb|CK120669.1|CK120669
genomic: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGgtaactgtcc ... atgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGAT
EST: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACG CATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGAT
genomic: ACTCCAGTACCACCCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGgtaactgtcc ... atgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGAT
gtcgtactgaaaaaccagaagattaatgtgattatttttttgcttatgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGATCAATGAGAAGTACTCTTTGTTTTTGTACGTTGCTGTTTTTAATCATGGC
gattaat putative branch site (score: 3)
aagattaatgtgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgtcctctttattccagtcacttggtgaaagacacttatgcttcagtcgtactgaaaaaccagaagattaatgtgattatttttttgcttatgaatgcagCATTTAGAGAGTTCATAGAGCTTATGAAGAGATCGAAACAAAGCTCCTGATCAATGAGAAGTACTCTTTGTTTTTGTACGTTGCTGTTTTTAATCATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT