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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctatatatttcatccattcttttttagaaccatttatcaactcatacagacatattatttactctggtgtacatgctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGG

Basic information

species Arabidopsis thaliana
transcript AT3G16480.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087838|gb|DR383597.1|DR383597
EST:     GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAG                         TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
genomic: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
EST: gi|47829013|gb|CK118697.1|CK118697
EST:     GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAG                         TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
genomic: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
EST: gi|125257790|gb|EL271875.1|EL271875
EST:     TGAAATGAACGCTGTTGCTGATGGAAAAG                         TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAA
genomic: TGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAA
EST: gi|86061726|gb|DR357483.1|DR357483
EST:     GGSAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAG                         TTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC
genomic: GGGAATTGAATTAGTAGCTAGTGAAATGAACGCTGTTGCTGATGGAAAAGgttttctata ... gctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatttatcaactcatacagacatattatttactctggtgtacatgctttggcagTTAATCAGAAACATCTTGATCGCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGG
                  agacatattattta  TA-rich tract