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gtaatatctagcttcatttgtaccatctatatcgtataattcattaatttgtgactgttattacttcaattttattttcagGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATAGAGTTGGCTCAAAGGTTGAAGGAATACGCCAATGCAGAAATAGG
species | Arabidopsis thaliana |
transcript | AT3G03960.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGGACGACCTTGAGAGANCTGTTGGATGATGGAGTTAACACATACAAG GCCATGTGCAGAGACAGCCGTATEST: gi|47831127|gb|CK120811.1|CK120811
genomic: TTTGGACGACCTTGAGAGAGCTGTTG-ATGATGGAGTTAACACATACAAGgtaatatcta ... ttattttcagGCCATGTGCAGAGACAGCCGTAT
EST: TTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTTAACACATACAAG GCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATAEST: gi|164223194|gb|EL978092.1|EL978092
genomic: TTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTTAACACATACAAGgtaatatcta ... ttattttcagGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATA
EST: GTTGATGATGGAGTTAACACATACAAG GCCATGTGCAGAGACAGCCGTATTGTTCEST: gi|125035632|gb|EL107901.1|EL107901
genomic: GTTGATGATGGAGTTAACACATACAAGgtaatatcta ... ttattttcagGCCATGTGCAGAGACAGCCGTATTGTTC
EST: TTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTTAACACATACAAG GCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGEST: gi|47828029|gb|CK117713.1|CK117713
genomic: TTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTTAACACATACAAGgtaatatcta ... ttattttcagGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGG
EST: TTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTTAACACATACAAG GCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATA
genomic: TTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTTAACACATACAAGgtaatatcta ... ttattttcagGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATA
ctatatcgtataattcattaatttgtgactgttattacttcaattttattttcagGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATAGAGTTGGCTCAAAGGTTGAAGGAATACGCCAATGCAGAAATAGG
cattaat putative branch site (score: 3)
ttttattttc putative PPT
tgttattacttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatctagcttcatttgtaccatctatatcgtataattcattaatttgtgactgttattacttcaattttattttcagGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATAGAGTTGGCTCAAAGGTTGAAGGAATACGCCAATGCAGAAATAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA