Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgtgttcagcttttgtttgctccgtgttatttctgtaatcaagatgctattcatatgtttttgctttcgagtatggatgggttgatgcgacctacatcactcacatcattgaatttgtttatgcagCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G36360.5 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G36360.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os03g61950.1 (Oryza sativa), 3'ss of exon 9
gtatgtgtgttcagcttttgtttgctccgtgttatttctgtaatcaagatgctattcatatgtttttgctttcgagtatggatgggttgatgcg-acctacatcactcacatcattgaatttgtttatgcagCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAG
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------------------------------tcttctcctggaactatccatcagttctagacattttgttgtccaa-acttttaattcattgcgcaatagcattactaacaaccatatatcttttggt-tagCTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGG
upper sequence: AT2G36360.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GRMZM2G351160_T01 (Zea mays), 3'ss of exon 9
gtatgtgtgttcagcttttgtttgctccgtgt-tatttctgtaatcaagatgctattcatatgtttttgctttcgagtatggatgggttgatgcgacctacatcactcacatcattgaatttgtttatgcagCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAG
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---------------------------agtttatatattcagaagttagattctgttgagtttttttcatgcaaaggtcttgattgcatggt-cagttaactgaagatgtat----atatcttttttgtcagCTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGATATGATGTGTACTATAATGAATGCATTATTTTAGACAGGG
upper sequence: AT2G36360.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA20G32900.1 (Glycine max), 3'ss of exon 9
gtatgtgtgttcagcttttgtttgctccgtgttatttctgtaatcaagatgctattcatatgtttttgctttcgagtatggatgggttgatgcgacctacatcactcacatcattg--aatttgtttatgcagCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAG
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------------------------ttcaatacttaatccttcatcatga----atgtataaatttaccattttagcc-----tgaaatcctgtcatttatttattttttatttttgttggagggtttttatagTTGTTGATGTTTGGAGGGCATGGGACTGGTGGATGGTTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTAGACAGAG
upper sequence: AT2G36360.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv13s0074g00620.t01 (Vitis vinifera), 3'ss of exon 10
gtatgtgtgttcagcttttgtttgctccgtgttatttctgtaatcaagatgctattcatatgtttttgctttcgagtatggatgggttgatgcgacctacatcactcacatcattgaatttgtttatgcagCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAG
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-------------------------ctcgtgtc-tttgcatagcttc--tgatttttat-tcccactgtgtccgaacttcctttttctgggattgagtacctgactgagaagatc--ttgtgtctttgcagCTCTTGTTATTTGGGGGGCATGGGACTGGTGGTTGGTTGAGTCGTTATGACATTTACTACAATGAATGCATTGTTTTGGATAGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125211166|gb|EL226120.1|EL226120EST: AAGCACCATCATCTCGATGTGGTCATACAGTTACATCTGGAGGACATTAT CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGG
genomic: AAGCACCATCATCTCGATGTGGTCATACAGTTACATCTGGAGGACATTATgtatgtgtgt ... gtttatgcagCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatggatgggttgatgcgacctacatcactcacatcattgaatttgtttatgcagCTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAG
cactcac putative branch site (score: 2)
tttgttt putative PPT
attgaatttgtttat TA-rich tract