Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaacaaaaccgatcttcacgacacaaattcgttctctttttcggttttatgacggtttgttattctacagggtgagTCCTTCAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTTTACAGGTTTTCACATATCTCATGTCTCCGCAATATATAT

Basic information

species Arabidopsis thaliana
transcript AT1G32790.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081011|gb|DR376768.1|DR376768
EST:     TTGGTTCTTTACCTATAAGGGTGAG                         TCCTTCAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATT
genomic: TTGGTTCTTTACCTATAAGG-TCA-gtgaaacaaa ... acagggtgagTCCTTCAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATT
EST: gi|86081011|gb|DR376768.1|DR376768
EST:     TTGGTTCTTTACCTATAAGGGTGAG                         TCCTTCAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATT
genomic: TTGGTTCTTTACCTATAAGG-TCA-gtgaaacaaa ... acagggtgagTCCTTCAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaaattcgttctctttttcggttttatgacggtttgttattctacagggtgagTCCTTCAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGATCTTAGCTTTACAGGTTTTCACATATCTCATGTCTCCGCAATATATAT
                                  tttgttatt  TA-rich tract