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gtaagcaaacaatcagacctaaattcttacctagaaaaacctgttgtgaacttcaccaacttcttatttctttgacttctgtgaaatctggtgtactaacaagatgttgtcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTGCAGTAAAGAAGTGGCAAATGTCTGATCCAGAGAAGGCACGAGAAAACT
species | Arabidopsis thaliana |
transcript | AT1G31910.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGGGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAAEST: gi|125259324|gb|EL273409.1|EL273409
genomic: AT-GGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAA
EST: AATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTTAGGEST: gi|124771248|gb|EH861378.1|EH861378
genomic: AATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGT-AGG
EST: AATAAGAGAACTGAGTTCTCTTTACCACCCACTGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACAACCATCAATGGTAGGEST: gi|125037276|gb|EL109545.1|EL109545
genomic: AATAAGAGAACTGAGTTCTCTTTACCA-CCACTGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACA-CCATCAATGGTAGG
EST: AATGGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTEST: gi|124960441|gb|EL035108.1|EL035108
genomic: AATGGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGT
EST: AATAAGAGAACTGAGTTCTCTTTACCACCCACTGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTEST: gi|125197270|gb|EL212224.1|EL212224
genomic: AATAAGAGAACTGAGTTCTCTTTACCA-CCACTGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGT
EST: TGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTEST: gi|124762696|gb|EH852826.1|EH852826
genomic: TGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGT
EST: AATGGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGEST: gi|86070800|gb|DR366557.1|DR366557
genomic: AATGGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGG
EST: TGATGAATCTT TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGT
genomic: TGATGAATCTTgtaagcaaac ... tcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGT
tatttctttgacttctgtgaaatctggtgtactaacaagatgttgtcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTGCAGTAAAGAAGTGGCAAATGTCTGATCCAGAGAAGGCACGAGAAAACT
tactaac putative branch site (score: 0)
tcttattt putative PPT
tcttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaacaatcagacctaaattcttacctagaaaaacctgttgtgaacttcaccaacttcttatttctttgacttctgtgaaatctggtgtactaacaagatgttgtcttatttagTTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTGCAGTAAAGAAGTGGCAAATGTCTGATCCAGAGAAGGCACGAGAAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT