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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcaccaaatggtacttgttcaacatatttttcctttcctttgtggtagattcattgatcttttggtgtttctgtttttcattttggcatagGTATTTGAAATCCTCTTTAAGTCGTTCGAGAACTATATTCTGAACACATACAAAACAAAATTTTCACAG

Basic information

species Arabidopsis thaliana
transcript AT1G30590.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164213727|gb|ES165209.1|ES165209
EST:     GATCGTTTGGATGAG                         GTATTTGAAATCCTCTTTAAGTCGTTCGAGAACTATATTCTGAACACATAC
genomic: GATCGTTTGGATGAGgtatggcacc ... tttggcatagGTATTTGAAATCCTCTTTAAGTCGTTCGAGAACTATATTCTGAACACATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttgtggtagattcattgatcttttggtgtttctgtttttcattttggcatagGTATTTGAAATCCTCTTTAAGTCGTTCGAGAACTATATTCTGAACACATACAAAACAAAATTTTCACAG
               cattgat  putative branch site (score: 4)
                               tttctgtttttcattt  putative PPT
                                     tttttcatttt  TA-rich tract