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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacattatatagtaactctaattagttatacttctcccaaaagtgattagtactgtcgaatttctctaagcttgtgttacatttgttgttgttgcggacagGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAAA

Basic information

species Arabidopsis thaliana
transcript AT1G26560.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26560.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv01s0011g00760.t01 (Vitis vinifera), 3'ss of exon 10
gtaagaaacattatatagtaactctaattagttatacttctcccaaaagtgattagtactgtcgaatttctctaagcttgtgttacatttgttgttgttgcggacagGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAAA
 |   |      || | | | ||   ||  | | | |   |||        || |||   ||  || |  |||||  |   || |  |||||||  |||||    |||||| ||| || |||||||| ||||| ||| | |||||||||||||| ||||||||||| || || |  ||||| || |||||  || ||||||||||||
ttggcatttggcatctggcatctggcatctgctgtccaagtccatggctctatcagt-tggtttaagtattctaaaataaagtgat-tttgttgg-gttgc----agGCAAATTCTATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTATCATCATCACTGAAA

upper sequence: AT1G26560.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv01s0011g00750.t01 (Vitis vinifera), 3'ss of exon 10
--------------------------------------------------------------------gtaagaaacattatatagtaactctaattagttatacttctcccaa--aagtgattagtactgtcgaatttctctaagcttgtgttacatttgttgttgttgcgg-acagGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAAA
                                                                     |  ||   || |||    ||     ||  |||   | ||| |     ||||   | |  || ||   |   |  |  ||| |     |  || | |||||| |  |||||||| ||| || |||||||| ||||| ||| | |||||||||||||| ||||||||||| || || |  ||||| || ||||| ||| | ||||||||||
gtatgtaatgcagaaaactgagatagactgtttcattttctggtgaatggggttagggctaatgaattttctgatcaatcatagctaaagatagatgggtttggcatctgctgtccaagtccatggctctatcagttggtttaagtcttctaaagtaagtggttttgttgggctacagGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164031456|gb|ES000641.1|ES000641
EST:     GTTTAAGGGTTTAAGCACGATTGGAGATAGG                         GCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATG
genomic: GTTTAAGGGTTTAAGCACGATTGGAGATAGGgtaagaaaca ... ttgcggacagGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATG
EST: gi|86084814|gb|DR380573.1|DR380573
EST:     GTCACTCTACCGTTTAAGGGTTTAAGCACGATTGGAGATAGG                         GCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAAGCTTGAT
genomic: GTCACTCTACCGTTTAAGGGTTTAAGCACGATTGGAGATAGGgtaagaaaca ... ttgcggacagGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAG-AAGCTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtactgtcgaatttctctaagcttgtgttacatttgttgttgttgcggacagGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATGAGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAAA
                              ttacattt  TA-rich tract