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gtacatcttcttttacactcatttggataacaataagatagattggttcaagttttaacagggttgtgttaatgtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTATGCCATGCCGGTCGAAG
species | Arabidopsis thaliana |
transcript | AT5G58330.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTEST: gi|86078149|gb|DR373906.1|DR373906
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTEST: gi|124771297|gb|EH861427.1|EH861427
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: AAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTEST: gi|124878258|gb|EH957695.1|EH957695
genomic: AAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: GAGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGGAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTEST: gi|86081501|gb|DR377258.1|DR377258
genomic: GAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTEST: gi|124766859|gb|EH856989.1|EH856989
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: AGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTEST: gi|116454053|gb|EG496645.1|EG496645
genomic: AGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTEST: gi|125280515|gb|EL294600.1|EL294600
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGT
EST: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGG GTGTACACGGATGGAAATCCTTA
genomic: TAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGgtacatcttc ... gtaaatttagGTGTACACGGATGGAAATCCTTA
aacaataagatagattggttcaagttttaacagggttgtgttaatgtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTATGCCATGCCGGTCGAAG
tgttaatgtaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatcttcttttacactcatttggataacaataagatagattggttcaagttttaacagggttgtgttaatgtaaatttagGTGTACACGGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTATGCCATGCCGGTCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG