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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcactcttcgtctgcattcctcctgccatcatcgttaagtcactttcattatttctcactagttacgtatgaaagaagtaatgtctttttttttgttattaattagggtttctggttaaaatttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTT

Basic information

species Arabidopsis thaliana
transcript AT5G46110.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46110.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: EFJ15759 (Selaginella moellendorffii), 3'ss of exon 8
gcactcttcgtctgcattcctcctgccatcatcgttaagtcactttcattatttctcactagttacgtatgaaagaagtaatgtctttttttttgttattaattagggtttctggtt--aaaatttgttctt-----agGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTT
                                                                           ||||  |  |  || |||      |||     ||    | ||  |||| |||    |     || | || ||||| || ||| |  | || || || || || || ||||| ||||||||||||   || ||| |    |||||||||||||||||||||||||
-------------------------------------------------------------------------gtaagtctttccccttgtttataagctaaacgtcgtgaacgatttaaaaaattgcctctcacacagATGGAGGGTCCCAAGCTATTGCAACACGGGTTTGCAGATGCCATTGCCAAAGTTGGAATGGTGAAGTTCCTGAGCGATCTCTTCTGGGTTGGAATGTTTT

upper sequence: AT5G46110.3 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: EFJ38162 (Selaginella moellendorffii), 3'ss of exon 7
gcactcttcgtctgcattcctcctgccatcatcgttaagtcactttcattatttctcactagttacgtatgaaagaagtaatgtctttttttttgttattaattagggtttctgg------ttaaaatttgttctt-----agGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTT
                                                                             |||| |||||    ||  |||| |  || |  |  |        | |||| |||    |     || | || ||||| || ||| |  | || || || || || || ||||| ||||||||||||   || ||  |    |||||||||||||||||||||||||
-----------------------------------------------------------------------------gtaa-gtcttccccttgtttataagctaagcgtcgtaaacgatttaaaaaattgcctctcacacagATGGAGGGTCCCAAGCTATTGCAACACGGGTTTGCAGATGCCATTGCCAAAGTTGGAATGGTGAAGTTTCTGAGCGATCTCTTCTGGGTTGGAATGTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgtctttttttttgttattaattagggtttctggttaaaatttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTT
                   tattaat  putative branch site (score: 2)
                                            tttgttctt  putative PPT
      tctttttttttgttat  TA-rich tract