1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttaagtcactttcattatttctcactagttacgtatgaaagaagtaatgtctttttttttgttattaattagggtttctggttaaaatttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTT
species | Arabidopsis thaliana |
transcript | AT5G46110.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|116415580|gb|EG458172.1|EG458172
genomic: CACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGEST: gi|124785029|gb|EH874708.1|EH874708
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTG
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTACCTAAACTACTTAACCATGGTTTCGCCGACGCGATTEST: gi|164236389|gb|ES079547.1|ES079547
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGT-CCTAAACTACTTAACCATGGTTTCGCCGACGCGATT
EST: CACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAEST: gi|164189198|gb|ES172250.1|ES172250
genomic: CACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTG-AAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAA
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAEST: gi|125261989|gb|EL276074.1|EL276074
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTA
EST: ATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|124925636|gb|EL003589.1|EL003589
genomic: ATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: TTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|124824738|gb|EH909604.1|EH909604
genomic: TTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: TCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACT-AACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|125050014|gb|EL122283.1|EL122283
genomic: TCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCEST: gi|164018672|gb|EL972834.1|EL972834
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCC
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGAEST: gi|124892781|gb|EH971683.1|EH971683
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGA
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTEST: gi|125020342|gb|EL092611.1|EL092611
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATT
EST: TCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|125150685|gb|EL183202.1|EL183202
genomic: TCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCAEST: gi|124909638|gb|EH983718.1|EH983718
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCA
EST: ATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|125285764|gb|EL299849.1|EL299849
genomic: ATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|125271325|gb|EL285410.1|EL285410
genomic: TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTAEST: gi|125320111|gb|EL334196.1|EL334196
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTA
EST: CATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAAEST: gi|124911995|gb|EH986075.1|EH986075
genomic: CATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAA
EST: CGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAEST: gi|124879254|gb|EH958691.1|EH958691
genomic: CGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
EST: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAAEST: gi|124836656|gb|EH921095.1|EH921095
genomic: CTTACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAA
EST: TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATC GTTGAAGGTCCTAAACTACTTAACCATGGTTTCNCCGACGCGATTGCTAAA
genomic: TACATCTCCATCATCGCACTCTTCGTCTGCATTCCTCCTGCCATCATCgttaagtcac ... ttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAA
gtaatgtctttttttttgttattaattagggtttctggttaaaatttgttcttagGTTGAAGGTCCTAAACTACTTAACCATGGTTTCGCCGACGCGATTGCTAAAGTTGGAATGACTAAATTCATCTCTGATCTCTTCTGGGTTGGAATGTTTT
tattaat putative branch site (score: 2)
tttgttctt putative PPT
tctttttttttgttat TA-rich tract