Sequence
atgc intronic sequence ATGC exonic sequencegtatttcatttctaaaacttgggaatgtgttttcagttttaatacttacgtaattttcactgcagcctagattataattctttcaaacttactcagATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAGCTAGAACATCTATACACGGAG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G29170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G29170.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA01G00780.1 (Glycine max), 3'ss of exon 8
----------gtatttcatttctaaaacttgggaatgtgttttcagttttaatacttacgtaattttcactgcagcctagattataattctttcaaacttactcagATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAGCTAGAACATCTATACACGGAG
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aaataattacaaataatggtactgataactctaaatat-ttgacagcattaat-tatgctaagtgtaca-tataatct---ctatttgtcaccaaaaaatgtgcagACAACATTTTCACCCTGAGGCAATGGTGTTCGAACAATTTCCCACAGGCTAAGGAACAACTTGAAAACTTGTACAAGGAG
upper sequence: AT4G29170.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv11s0016g02770.t01 (Vitis vinifera), 3'ss of exon 7
gtatttcatttctaaaacttgggaat---gtgttttcagttttaatacttacgtaattttcactgcagcctagattataattctttcaaacttactcagATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAGCTAGAACATCTATACACGGAG
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gtttttcctttaccagacttttttcttgagtgcaggaagttgtga-actcttatggcatgctatatattcttttcttgttatgtgccaacactccacagACAACATTTTTACACTGCGGCAGTGGTGTTCAAACAATTTTCCTGAGGCCAAGGAGCAGCTTGAACACATGTACAAGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|152033982|gb|AU238562.2|AU238562EST: GGAATGCAATTGAAGTTGCTCACCAGTCGGCTAACAGATGGACAG ATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCC
genomic: GGAATGCAATTGAAGTTGCTCACCAGTCGGCTAACAGATGGACAGgtatttcatt ... acttactcagATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacttacgtaattttcactgcagcctagattataattctttcaaacttactcagATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAGCTAGAACATCTATACACGGAG
cttactc CT-rich tract
attataattctttcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttcatttctaaaacttgggaatgtgttttcagttttaatacttacgtaattttcactgcagcctagattataattctttcaaacttactcagATAACATCTTCACACTGCGACAATGGTGTTCAAACAACTTCCCCCAGGCCAAGGAACAGCTAGAACATCTATACACGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA