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...atgtttctcattttgaaacttattgtgtgtcataagctgcaacagatggttaggatattgtgaatttgcaaatgcaaactaatatgaactacattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAGTAGTGGATCATATTCGATCACTAGGTGGGGAAGTGC
species | Arabidopsis thaliana |
transcript | AT4G14210.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAG GAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGEST: gi|86074020|gb|DR369777.1|DR369777
genomic: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGgtttgacact ... acattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGG
EST: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAG GAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGEST: gi|86074019|gb|DR369776.1|DR369776
genomic: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGgtttgacact ... acattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGG
EST: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAG GAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGEST: gi|86074018|gb|DR369775.1|DR369775
genomic: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGgtttgacact ... acattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGG
EST: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAG GAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGEST: gi|125109658|gb|EL162010.1|EL162010
genomic: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGgtttgacact ... acattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGG
EST: GATAGCTTTGAACCGGTTTCTTCAG GAAAAACATGGTTCCAAGATGGCATTEST: gi|116473797|gb|EG516389.1|EG516389
genomic: GATAGCTTTGAACCGGTTTCTTCAGgtttgacact ... acattgacagGAAAAACATGGTTCCAAGATGGCATT
EST: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAG GAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGG
genomic: ATGAACTGTCAATGCAATGCATTTTGATAGCTTTGAACCGGTTTCTTCAGgtttgacact ... acattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGG
atggttaggatattgtgaatttgcaaatgcaaactaatatgaactacattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAGTAGTGGATCATATTCGATCACTAGGTGGGGAAGTGC
aactaat putative branch site (score: 2)
aaactaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttctcattttgaaacttattgtgtgtcataagctgcaacagatggttaggatattgtgaatttgcaaatgcaaactaatatgaactacattgacagGAAAAACATGGTTCCAAGATGGCATTCTTGGATGGTAATCCTCCGGAAAGGCTTTGTATGCCAGTAGTGGATCATATTCGATCACTAGGTGGGGAAGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - ttgaaac
- - - - - - - - - - - - - - - cataagc
- - - - - - - - - - - - - - - - - - - -caacaga
- - - - - - - - - - - - - - - - - - - - - - - -ggttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa