1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttggatattcattggagcttaaagattgtcatgagctgagattagctgcatgtggtgaccttgagttcctcatatatgtattggtttatggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGGAAGACAACCATATCTACATGACGGGTCCTGCAGAAGCTGTTTTCTATG
species | Arabidopsis thaliana |
transcript | AT3G53580.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTGTGCTCTGGTTGTTGCASCAGTCCTTDAAGGTCGAGCCGACAGG AAATGCMCGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|124831382|gb|EH915821.1|EH915821
genomic: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: TTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|125157755|gb|EL186678.1|EL186678
genomic: TTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: TTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|86082085|gb|DR377844.1|DR377844
genomic: TTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|86080834|gb|DR376591.1|DR376591
genomic: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|86065678|gb|DR361435.1|DR361435
genomic: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: GCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|124811007|gb|EH895873.1|EH895873
genomic: GCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: CAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|86078439|gb|DR374196.1|DR374196
genomic: CAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|125130598|gb|EL173732.1|EL173732
genomic: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: CTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|116478499|gb|EG521091.1|EG521091
genomic: CTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGEST: gi|124929173|gb|EL006745.1|EL006745
genomic: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
EST: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAEST: gi|116478497|gb|EG521089.1|EG521089
genomic: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATA
EST: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGG AAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
genomic: GAGCTTGTGCTCTGGTTGTTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGgtaagtttgg ... ggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAG
gctgcatgtggtgaccttgagttcctcatatatgtattggtttatggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGGAAGACAACCATATCTACATGACGGGTCCTGCAGAAGCTGTTTTCTATG
atatatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggatattcattggagcttaaagattgtcatgagctgagattagctgcatgtggtgaccttgagttcctcatatatgtattggtttatggtggaacagAAATGCACGGTGGATCTACCGGGCGGACCATTGGAGATAGAGTGGAAACAGGAAGACAACCATATCTACATGACGGGTCCTGCAGAAGCTGTTTTCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttat