1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaattcctaaccaaaccagacatctggatagaaatctaagattttgagctcctgtgaaagcaaagatgataatatatctctctgcttgatttgtttcagAAAATGCTGTTAATGGATCCGACCAAAAGAATCAACGCAAGAGCCGCCCTGGAGCATGAATACTTCAAGGATCTTGGAGGCATGCCTTAGAAAGGCATAA
species | Arabidopsis thaliana |
transcript | AT3G48750.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATCTAGATCCCGATGGAGTCGANCTCCTTTCT AAAATGCTGTTAATGGATCCGACCAAAAGAATCAACGCAAGAGCCGCCCTG
genomic: AATCTAGATCCCGATGGAGTCGATCTCCTTTCTgtaagttcac ... tttgtttcagAAAATGCTGTTAATGGATCCGACCAAAAGAATCAACGCAAGAGCCGCCCTG
tgagctcctgtgaaagcaaagatgataatatatctctctgcttgatttgtttcagAAAATGCTGTTAATGGATCCGACCAAAAGAATCAACGCAAGAGCCGCCCTGGAGCATGAATACTTCAAGGATCTTGGAGGCATGCCTTAGAAAGGCATAA
gcttgat putative branch site (score: 5)
tttgtttc CT-rich tract
aaagatgataatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaattcctaaccaaaccagacatctggatagaaatctaagattttgagctcctgtgaaagcaaagatgataatatatctctctgcttgatttgtttcagAAAATGCTGTTAATGGATCCGACCAAAAGAATCAACGCAAGAGCCGCCCTGGAGCATGAATACTTCAAGGATCTTGGAGGCATGCCTTAGAAAGGCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - -ccaaacc
- - - - - - - - - - - - - - - agaaatc
- - - - - - - - - - - - - - - - - - - - gattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaa