Sequence
atgc intronic sequence ATGC exonic sequencegtaagtagtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaacagtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCACGACT
Basic information
| species | Arabidopsis thaliana |
| transcript | AT3G23580.1 |
| intron # | 8 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G23580.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S41_228V6.1 (Physcomitrella patens), 3'ss of exon 8
gtaagta-gtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaacagtagtgtatctt-cattgactaagttggttttggtacttttatgacaaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCACGACT---
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gtaagttcgtttctggttttcctttatcgattgcggttgccatcgttgaacattttggtctctatttcagacatagaattatgctgtacggcgccgcgatctgatgtgagatactt--ggttcatttgcagAGGCAAAACCAATTTCTTCGAGAAGAGAGTAGGAGAGTATCAGAAGGCTTCAGTGATGTCCAATCT---GAACGGGAATGACGCAAACAATCATGTGTTTAGA
upper sequence: AT3G23580.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S215_91V6.1 (Physcomitrella patens), 3'ss of exon 10
gtaagta-gtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaaca-gtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCACGACT----
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gtaagtttgtcacgaaaccatttctacttgcgctagctttcaacatgtt--tcttcattctgcatatcttgagcacgtattacaagacattt--ctaacacgatacttgtgcttt--------atatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTCAGTGATGTC---CCACTTAAACGGCGGTGACAACCACGTGTTCA-GATTAGAT
upper sequence: AT3G23580.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: PP1S103_75V6.1 (Physcomitrella patens), 3'ss of exon 6
gtaagtagtcgatatatatcgctgagtttctctcatctctaggatcacaatgctaagataacatatcaagaacagtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAAC---TACGAATTCACGACT
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----gtaagttagctgtgatgctgattttctttc--ctcgaacgttttggt--tattcatacttttcctgttcag-agtcaacggtcga-agcaaagcctttaatgcggatctcactattgttttgcagGGGAAAGACTAATTTCTTTGAGAAGAGAGTGGGAGAATATCAGAAGGCCTCAGTTATGTCTAATCTGAATGGTGGTGACACAAACAATCATGTATTT-CGA--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124910988|gb|EH985068.1|EH985068EST: ACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCA AGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGA
genomic: ACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCAgtaagtagtc ... aaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtagtgtatcttcattgactaagttggttttggtacttttatgacaaatttgcagAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCACGACT
cattgac putative branch site (score: 3)
ttttatgacaaattt TA-rich tract
