Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttccatcaatacaatgtcttaaaatctttctctgaatatgtccaattgttaaacacttggctctgtttccttttcagGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCGACAAACTAG

Basic information

species Arabidopsis thaliana
transcript AT3G14450.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14450.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------------gtaaacttccatcaatacaatg-tcttaaaatctttctctgaatatgtccaattgttaaacacttggctctgtttccttttcagGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCG-ACAAACTAG--------------------------------------
                                  || || ||    |   ||||| | ||    | | | | |  || ||  || || ||||    |     |   ||  ||| |||||| ||||| ||||||||||||||||||||| |  || ||||  || | | | |  | |||                                       
gtattttcccagtattctgagtttgttttatatttagacctcagctatgtcaatgatattttgctttgtttatttatttgctcattttttaattgttgcatgcaactt--tttacagGGTCAGTCCTTCAAAGACACCAGTGAGGCCACGGGTCCCTCGTGCAACGTTGCATTAGCTAATTATCGGAGTATAAACCTGCGGATGGAATTTGGTGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124724518|gb|EH815920.1|EH815920
EST:     CTTAGCGCGCTCAATTGCAGCGGAATGGTCGTTGGATCACAACCGATAAG                         GGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGA
genomic: CTTAGCGCGCTCAATTGCAGCGGAATGGTCGTTGGATCACAACCGATAAGgtaaacttcc ... tccttttcagGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatctttctctgaatatgtccaattgttaaacacttggctctgtttccttttcagGGTAAGTCCATCAAAGACACCAGTGAGGCCAAGAATCACTCGACCACCATCGACAAACTAG
                                      ctctgtttccttttc  CT-rich tract
                     aattgttaaa  TA-rich tract